The steps to install Galaxy mostly follow those of the regular instructions. The difference is that after performing the groundwork above, you should initialize the configuration file (cp config/galaxy.yml.sample config/galaxy.yml) and modify it as outlined below before starting the server. If you make any changes to this configuration file while the server is running, you will have to restart the server for the changes to take effect.
During deployment, you may run into problems with failed jobs. By default, Galaxy removes files related to job execution. You can instruct Galaxy to keep files of failed jobs with: cleanup_job: onsuccess
Nfs The Run Loc.zip File
When datasets are deleted from a history or library, it is simply marked as deleted and not actually removed, since it can later be undeleted. To free disk space, a set of scripts can be run (e.g. from cron) to remove the data files as specified by local policy. See the Purge histories and datasets page for instructions.
File sizes have grown very large thanks to rapidly advancing sequencer technology, and it is not always practical to upload these files through the browser. Thankfully, a simple solution is to allow Galaxy users to upload them via FTP and import those files in to their histories. Configuration for FTP is explained on the File Upload via FTP page.
If your server logs errors about the database connection pool size, you may need to increase the default minimum and maximum number of pool connections, 5 and 10. These config file options are database_engine_option_pool_size and database_engine_option_max_overflow. 2ff7e9595c
Comments